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How LiR Labs found microscopy experts for a niche no crowd can label

Case studyAI for scienceMicroscopyExpert sourcing
Pathwize and LiR Labs: expertise for what's next. Specialized people, higher quality AI data.

The company

LiR Labs automates biological water treatment. Its predictive platform combines hardware and software into a digital operator: inline microscopes watch the microorganisms in a treatment plant continuously, and AI turns what they see into real-time decisions. Beyond wastewater, the same approach applies to bioreactors in biological manufacturing and to live cultures in food and beverage production.

The problem LiR Labs solves

Around 80% of the world's wastewater is treated biologically, by microorganisms in activated sludge. Their health decides whether a plant runs well, yet operators cannot see it change in real time. Samples go to the lab every now and then, so problems surface only once performance has already dropped.

  • Treatment anomalies creep up unseen and cost money by the time anyone notices.
  • Effluent quality drifts between lab samples; one exceedance of the discharge limits can mean fines and reports.
  • Blowers run on fixed setpoints and overshoot the oxygen the biology needs, and aeration is often more than half of a plant's energy bill.
  • A quarter of wastewater operators will retire in the next decade, and their experience leaves with them.
Fig. 1 · Biological wastewater treatment by the numbers

80%

of the world's wastewater is treated biologically

>50%

of a plant's energy bill often goes to aeration

25%

of wastewater operators retire within the next decade

24 h

earlier warning of anomalies with continuous microscopy

Source: lirlabs.com

LiR Labs' solution

LiR Labs puts a microscope into the process and lets AI read it around the clock. The platform covers the whole loop:

  • Understand: continuous, AI-driven microscopic analysis of the sludge instead of occasional lab samples.
  • Act: software that helps run the plant cheaper and more reliably, based on what the biology actually needs.
  • Anticipate: alerts that flag warning signs up to 24 hours before operations are disrupted.
Fig. 2 · How LiR Labs' platform turns microscopy into decisions

Step 1

Inline microscope

Images the activated sludge continuously, in the process.

Step 2

AI analysis

Computer vision reads flocs, filaments and microbial health.

Step 3

Act

Aerate and control based on what the biology needs.

Step 4

Anticipate

Alerts up to 24 hours before operations are disrupted.

Source: lirlabs.com

The core of it is computer vision on microscope images. Those models are only as good as the people who annotate their training data: someone has to recognize, outline and classify the structures in every image correctly before a model can learn to do it on its own.

The challenge

The work called for annotators who can read microscope images of activated sludge, the biology at the heart of wastewater treatment. That is not a skill you find in a general labeling workforce, and not one you can teach in a one-page guideline. LiR Labs defined what it needed precisely:

  • Practical experience with activated sludge microscopy.
  • Recognizing filamentous bacteria by their morphotype.
  • Estimating the filament index of a sample.
  • Telling bulking sludge, compact flocs and foam apart.
  • Experience with image segmentation, because the structures have to be outlined by hand.
Fig. 3 · What an annotator has to mark in an activated sludge image (schematic illustration)
FlocFilamentscale bar
  • Floc outline: segment each floc and judge whether it is compact or open.
  • Filaments: trace filamentous bacteria and assign their morphotype.
  • Sample level: estimate the filament index and tell bulking sludge from foam.
Fig. 4 · Screening rubric derived from LiR Labs' skills overview
Required
  • Practical microscopy of activated sludge
Hard criteria

Tier 1 needs at least two

  • Filament morphotypes
  • Filament index
  • Bulking sludge versus foam
Plus
  • Segmentation experience
  • Fitting field of study
  • Weekly availability
Source: LiR Labs' requirements, Pathwize screening

In-house, LiR Labs had a small team that could label, but not the capacity to scale. Hiring specialists one by one would have taken months for a skill set that only a handful of people in any one region have.

The approach

Pathwize turned LiR Labs' skills overview into a targeted call for experts across its network of students, graduates and specialists, reaching people by field of study instead of posting a generic job ad.

  • Call for experts: one targeted call, shown to members whose field of study fits, from water science and microbiology to environmental and process engineering.
  • First review: 100 applications came in, 84 of them complete and relevant enough to assess.
  • Scoring against the criteria: every profile was checked against LiR Labs' hard criteria (activated sludge microscopy, filament morphotypes, filament index, bulking versus foam) and its preferences such as segmentation experience.
  • Tiering: the strongest matches went into Tier 1, solid profiles that need a short onboarding into Tier 2, together with their weekly availability.
  • Anonymized shortlist: LiR Labs received anonymized profiles to review with its ML team before meeting anyone.
  • Practical screening: before work starts, each candidate labels a few real images (bulking sludge, a compact floc, foam), so self-assessment is checked against actual skill.

Who was found

Out of 84 usable applications, 22 experts matched LiR Labs' criteria:

Fig. 5 · Screening funnel from one call for experts
Applications100
Usable profiles84% of previous · 84
Matched to the criteria (Tier 1 and 2)26% of previous · 22
Tier 1, ready to start32% of previous · 7
Source: Pathwize screening for LiR Labs
Fig. 6 · Composition of the shortlist
4
3
15
  • Tier 1, 10+ hours a week · full criteria match and high capacity
  • Tier 1, other availability · full criteria match
  • Tier 2 · fitting field and microscopy, short onboarding
Source: Pathwize screening for LiR Labs

Tier 1 · 7 experts

Hands-on microscopy of activated sludge plus at least two of the hard criteria. Backgrounds in water science, bioprocess and environmental engineering, microbiology, limnology and hydrobiology. Four of them with 10 or more hours a week available.

Tier 2 · 15 experts

Fitting field and microscopy experience, for example environmental protection, environmental and process engineering, botany and phycology with filamentous structures, or biotechnology. Ready after a short, task-specific onboarding.

Outcome and next steps

LiR Labs reviewed the anonymized shortlist with its team and tech lead. In a niche where most labeling vendors cannot staff a single qualified annotator, the pool for the pilot stood within weeks, and it met LiR Labs' criteria better than the team had expected.

The annotation itself starts once LiR Labs' images and labeling guide are ready for external work. The plan is the approach most teams with hand-segmented data end up with: label a base set in-house, train a small model that proposes masks, then scale the annotation with external experts who correct and refine them. The expert pool stays in place for that start, and it keeps growing.

Fig. 7 · Planned annotation pipeline (dashed: with Pathwize experts)

Step 1

Base set in-house

LiR Labs segments a first set of images by hand.

Step 2

Small model

Trained on the base set, it proposes masks for new images.

Step 3

Expert correction

Matched Pathwize experts correct and refine the proposals.

Step 4

Training data at scale

Reviewed annotations feed the production model.

Key takeaways

  • Write the criteria down first. LiR Labs' precise skills overview is what made a 100-application call sortable in days.
  • Match by field of study, then verify. Degrees narrow the pool; a practical test on real images shows who can actually do the work.
  • Tier the shortlist. A ready-to-start Tier 1 plus an onboardable Tier 2 gives a team room to scale without starting the search again.
  • Get the data ready before scaling. Pre-segmentation by a small in-house model makes external expert time far more effective.

“Really strong profiles. Pathwize's selection matches our criteria better than we had expected.”

Benedikt Huber

Benedikt Huber

Co-Founder, LiR Labs

First published: Partnership announcement on LinkedIn